2024 The sponge microbiome project

The sponge microbiome project

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August undefined, 2024

WebMar 10, 2024 · Methanotrophy by the sponge-hosted microbiome has been mainly reported in the ecological context of deep-sea hydrocarbon seep niches where methane is either … WebFeb 1, 2024 · Overview of the dataset. The non-targeted LC-MS/MS metabolomic dataset contained a total of 10,118 MFs from the whole sponge tissue (ST) and microbial cell (MC) samples across the six sponge species, and 3422 of them were detected in at least two samples and were used for data normalization and downstream analysis (Table 1).The ST …

Erratum to: The sponge microbiome project - Oxford Academic

WebMay 8, 2024 · The Sponge Microbiome Project was queried to explore the HMA-LMA dichotomy in the largest currently available dataset on sponge microbiomes. Our results strongly support previous findings that showed a higher diversity and different microbial community structures in HMA compared to LMA sponges. A number of clades (phyla, … WebJun 8, 2024 · Coral/sponge holobiont is the stable assemblage of the host and its symbiotic bionts, e.g., microalgae, bacteria, archaea, virus, fungi, and protists. Coral/sponge microbiome means the entire microbial community and genes that reside within a coral/sponge. Sponges host abundant and diverse microbes including bacteria, archaea, … christow doctors surgery

Predicting the HMA-LMA Status in Marine Sponges by Machine …

WebAug 9, 2024 · Supporting data for "The sponge microbiome project" Dataset type: Metagenomic Data released on August 09, 2024. ... Projects: Sample; Files; Funding; History; Table Settings. Items per page: Common Name Scienfic Name Sample Attributes Taxonomic ID Genbank Name. Sample ID WebThe University of Queensland. Feb 2024 - Aug 20247 months. Brisbane, Queensland, Australia. Graduate student intern at the Australian Centre for Ecogenomics (ACE) and the Australian Institute of Marine Science (AIMS) studying the sponge microbiome. WebApr 27, 2024 · Global assessments of sponge microbiome composition and diversity as part of the Global Sponge Microbiome Project also support these regional trends (Thomas et al. 2016; Moitinho-Silva et al. 2024a; Pita et al. 2024). This, along with strong phylogenetic relationships in microbiome diversity, ... gfp justification memorandum

Insights into the Antimicrobial Activities and …

The sponge holobiont in a changing ocean: from …

WebJan 11, 2024 · the Sponge Microbiome Project (SMP) (Thomas et al., 2016; Moitinho-Silva et al., 2024b) part of the Earth Microbiome. Project (EMP 3). The project contains 16S rRNA gene amplicon. WebAug 22, 2024 · Sponge diversity has been reported to decrease from well-preserved to polluted environments, but whether diversity and intra-species variation of their … chris towers cbsWebJul 16, 2024 · For the case study on the sponge microbiome, QIIME-processed data were downloaded from Moitinho et al. . Samples with fewer than 1000 counts were removed and the samples were rarefied to even ... chris towe md

"WebThe Skin Deep Microbiome is a crowd funding project that aims to collect skin samples from people, all over the world and of various ages to study diversity of the natural bacteria found on our skin. " - The sponge microbiome project

The sponge microbiome project

The Nitrogen-Cycling Network of Bacterial Symbionts in the Sponge …

WebAug 13, 2024 · Comparison of these genomes to data from the Sponge Earth Microbiome Project revealed that "Ca U Cenporiarchaeum stylissum" has been exclusively detected in sponges and can hence be classified as a specialist, while "Ca U Nitrosopumilus detritiferus" and "Ca U Nitrosopumilus hexadellus" are also detected outside the sponge holobiont and … WebOct 1, 2024 · Here, we provide an extensive and standardised dataset that will facilitate sponge microbiome comparisons across large spatial, temporal, and environmental …

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WebDec 26, 2024 · Members of the widespread bacterial phylum Chloroflexi can dominate high-microbial-abundance (HMA) sponge microbiomes. In the Sponge Microbiome Project, Chloroflexi sequences amounted to 20 to 30% of the total microbiome of certain HMA sponge genera with the classes/clades SAR202, Caldilineae, and Anaerolineae being the … WebMar 9, 2024 · The Global Sponge Microbiome Project, under the um- brella of the Earth Microbiome Project, is a recent col- laborative initiative to assess the microbial diversity in

WebThe sponge microbiome project Lucas Moitinho-Silva 1 , Shaun Nielsen 1 , Amnon Amir 2 , Antonio Gonzalez , Gail L. Ackermann 2 , Carlo Cerrano 3 , Carmen Astudillo-Garcia 4 , … WebJul 7, 2024 · By comparing the microbiome diversity of 189 sponge species from the Sponge Microbiome Project (4), we discovered that demosponges and …

WebSep 2, 2024 · Fig. 3: Microbial host-specificity, the sponge microbiome carrying capacity, and the HMA-LMA dichotomy in deep-sea sponges; as well as comparison to the Sponge … WebHaliclona fulva is encrusting marine sponge species dwelling in coralligenous accretions or semidark caves of the Mediterranean Sea (PDF) Stable and Enriched Cenarchaeum symbiosum and Uncultured Betaproteobacteria HF1 in the Microbiome of the Mediterranean Sponge Haliclona fulva (Demospongiae: Haplosclerida) Pedro Filipe de Brito Brandão ...

WebFeb 8, 2024 · To investigate the global distribution of a sponge symbiont, the V4 region of the 16S rRNA gene extracted from the MAG was searched by BLASTN (e-value cutoff: 1e-05) against the datasets of 16S rRNA gene sequences in the Sponge Microbiome Project (SMP) (Moitinho-Silva et al., 2024b) and the Deep-sea Sponge Microbiome Project database (D …

WebJun 28, 2024 · SM-BGC and metabolomics networks suggest the presence of novel polyketides and peptides, including cyclic depsipeptide-related compounds. Moreover, exploration of the 'Sponge Microbiome Project' dataset revealed that Aquimarina spp. possess low-abundance distributions worldwide across multiple marine biotopes. Our … chris towers el paso txWebMay 8, 2024 · The Sponge Microbiome Project was queried to explore the HMA-LMA dichotomy in the largest currently available dataset on sponge microbiomes. Our results … chris towers facebookWebOct 19, 2024 · Members of the proposed phylum ‘Candidatus Poribacteria’ are among the most abundant microorganisms in the highly diverse microbiome of the sponge mesohyl. Genomic and phylogenetic characteristics of this proposed phylum are barely known. In this study, we analyzed metagenome-assembled genomes (MAGs) obtained from the coral … chris towers cbs sportsWebApr 11, 2024 · Increased microbial densities in the seawater may also favor the emergence of coral pathogens and decrease resistance to coral bleaching due to dysbiosis in the coral microbiome and its surroundings [49,50,51,52]. Despite these connections between microbes and higher trophic levels, very few studies combine both micro and macro data … chris towers corshamWebDec 26, 2024 · Members of the widespread bacterial phylum Chloroflexi can dominate high-microbial-abundance (HMA) sponge microbiomes. In the Sponge Microbiome Project, … gfp in the farhttp://gigadb.org/dataset/view/id/100332/File_page/2 gfp ip beadsWebSpongeEMP Web + REST-API server for the SpongeEMP project. SpongeEMP is a comprehensive datatset of sea sponge microbiome samples, which is a part of the Earth … chris towell